Selected Papers

1.  Gou, L.T.*, Lim, D.H.*, Ma, W.B.*, Aubol, B.E., Hao, Y.J., Wang, X., Zhao, J., Liang, Z.Y., Shao, C.W., Zhang, X., Meng, F., Li,             H.R., Zhang, X.R., Xu, R.M., Li, D.S., Rosenfeld, M.G., Mellon, P.L., Adams, J.A., Liu, M.F., and Fu, X.D.  (2020) Initiation of   

     Parental Genome Reprogramming in Fertilized Oocyte by Splicing Kinase SRPK1-Catalyzed Protamine Phosphorylation. Cell   

     180(6), 1212-1227 (*co-first authors) PMID: 3216915

 

2.  Lim, D.H.*, Lee, S.J.*, Chou, M.S., Han, J.Y., Seong, Y.M., Na, D.K., Kwon, Y.S., and Lee, Y.S. (2020) The conserved microRNA 

     miR-8-3p coordinates the expression of V-ATPase subunits to regulate ecdysone biosynthesis for Drosophila metamorphosis.

     FASEB J. 34(5), 6449-6465 (*co-first authors) PMID: 32196731

 

3.  Lim, D.H.*, Lee, S.*, Han, J.Y.*, Choi, M.S., Hong, J.S., and Lee, Y.S. (2019). MicroRNA miR-252 targets mbt to control the

     developmental growth of Drosophila. Insect Mol. Biol. 28(3), 444-454. (*co-first authors) PMID: 32504809

 

4.  Lim, D.H.*, Lee, S.*, Han, J.Y., Choi, M.S., Hong, J.S., Seong, Y., Kwon, Y.S., and Lee, Y.S. (2018). Ecdysone-responsive

     microRNA-252-5p controls the cell cycle by targeting Abi in Drosophila. FASEB J. 32(8), 4519-4533. (*co-first authors) 

     PMID: 29543534

2021~

22.  Li, L.X., Luo, H.F., Lim, D.H., Han, L., Li, Y., Fu, X.D., and Qi, Y.J. (2021) Genome-wide identification of RNA-chromatin

       interactions reveals co-regulatory networks of gene expression in ArabidopsisNature Plants. 7(10) 1364-

       1378 PMID:34650265

~2020

21.  Hao, Y.J., Wang, D.P., Wu, S.H., Li, X., Shao, C.W., Zhang, P., Chen, J.Y., Lim, D.H., Fu, X.D., He, S.M., and Chen,

       R.S. (2020) Active Retrotransposons Help Maintain Pericentromeric Heterochromatin Required for Faithful Cell Division.

       Genome Res. 30(11), 1570-1582. PMID:33060173

20.  Lee, S.J., Hong, J.S., Lim, D.H., and Lee, Y.S. (2020) Roles for Drosophila Cap1 2’-O-ribose methyltransferase in the

       small RNA silencing pathway associated with Argonaute 2. Insect Biochem. Mol. Biol. 123, 103415. PMID: 32504809

19.  Lim, D.H.*, Lee, S.J.*, Chou, M.S., Han, J.Y., Seong, Y.M., Na, D.K., Kwon, Y.S., and Lee, Y.S. (2020) The conserved

       microRNA miR-8-3p coordinates the expression of V-ATPase subunits to regulate ecdysone biosynthesis for Drosophila

       metamorphosis. FASEB J. 34(5), 6449-6465 (*co-first authors). PMID: 32196731

18.  Gou, L.T.*, Lim, D.H.*, Ma, W.B.*, Aubol, B.E., Hao, Y.J., Wang, X., Zhao, J., Liang, Z.Y., Shao, C.W., Zhang, X., Meng,

       F., Li, H.R., Zhang, X.R., Xu, R.M., Li, D.S., Rosenfeld, M.G., Mellon, P.L., Adams, J.A., Liu, M.F., and Fu, X.D.  (2020)

       Initiation of Parental Genome Reprogramming in Fertilized Oocyte by Splicing Kinase SRPK1-Catalyzed Protamine

       Phosphorylation. Cell 180(6), 1212-1227 (*co-first authors). PMID: 3216915

17.  Chen, J.Y., Lim, D.H., and Fu, X.D. (2020) Mechanistic Dissection of RNA Binding Proteins in Regulated Gene

       Expression at Chromatin Levels. Cold Spring Harb. Symp. Quant. Biol. 84, 55-66. PMID: 31900328

16.  Zhou, B., Li, X., Luo, D., Lim, D.H., Zhou, Y., and Fu, X.D. (2019). GRID-seq for comprehensive analysis of global RNA-

       chromatin interactions. Nature Protocols. 14(7), 2036-2068. PMID: 31175345

15.  Lim, D.H.*, Lee, S.*, Han, J.Y.*, Choi, M.S., Hong, J.S., and Lee, Y.S. (2019). MicroRNA miR-252 targets mbt to control

       the developmental growth of Drosophila. Insect Mol. Biol. 28(3), 444-454. (*co-first authors). PMID: 30582233

14.  Lim, D.H.*, Lee, S.*, Han, J.Y., Choi, M.S., Hong, J.S., Seong, Y., Kwon, Y.S., and Lee, Y.S. (2018). Ecdysone-

       responsive microRNA-252-5p controls the cell cycle by targeting Abi in Drosophila. FASEB J. 32(8), 4519-4533. (*co-

       first authors). PMID: 29543534

13.  Bao, X., Guo, X., Yin, M., Tariq, M., Lai, Y., Kanwal, S., Zhou, J., Li, N., Lv, Y., Pulido-Quetglas, C., Wang, X., Ji, L.,

       Khan, M.J., Zhu, X., Luo, Z., Shao, C., Lim, D.H., Liu, X., Li, N., Wang, W., He, M.H., Liu, Y.L., Ward, C., Wang, T. ,

       Zhang, G., Wang, D.Y., Yang, J.H., Chen, Y.W., Zhang, C.L., Jauch, R., Yang, Y.G., Wang, Y.M., Qin, B.M., Anko, M.L.,

       Hutchins, A.P., Sun, H., Wang, H.T., Fu, X.D., Zhang, B.L., and Esteban, M.A. (2018). Capturing the interactome of

       newly transcribed RNA. Nature Methods. 15(3), 213-220. PMID: 29431736

12.  Lim, J.H., Kim, D.J., Lee, D.E., Han, J.Y., Chung, J.H., Ahn, H.K., Lee, S.W., Lim, D.H., Lee, Y.S., Park, S.Y., and Ryu,

       H.M. (2015). Genome-wide microRNA expression profiling in placentas of fetuses with Down syndrome. Placenta.   

       36(3), 322-328.

11.  Seong, Y., Lim, D.H., Kim, A., Seo, J.H., Lee, Y.S., Song, H., and Kwon, Y.S. (2014). Global identification of target

       recognition and cleavage by the Microprocessor in human ES cells. Nucleic Acids Res. 42(20), 12806-12821.

10.  Lim, D.H., Oh, C.T., Han, S.J., and Lee, Y.S. (2014). Methods for studying the biological consequences of endo-siRNA

       deficiency in Drosophila melanogaster. Methods Mol. Biol. 1173, 51-58.

9.  Joo, J.Y., Lee, J., Ko, H.Y., Lee, Y.S., Lim, D.H., Kim, E.Y., Cho, S., Hong, K.S., Ko, J.J., Lee, S., Lee, Y.S., Choi, Y.S.,

     Lee, K.A., and Kim, S.H. (2014). Microinjection free delivery of miRNA inhibitor into zygotes. Sci. Rep. 4, 5417.

8.  Lim, D.H., Lee, L., Oh, C.T., Kim, N.H., Hwang, S., Han, S.J., and Lee, Y.S. (2013). Microarray analysis of Drosophila

     dicer-2 mutants reveals potential regulation of mitochondrial metabolism by endogenous siRNAs. J. Cell. Biochem.

     114(2), 418-427.

7.  Kwak, G.H., Lim, D.H., Han, J.Y., Lee, Y.S., and Kim, H.Y. (2012). Methionine sulfoxide reductase B3 protects from

     endoplasmic reticulum stress in Drosophila and in mammalian cells. Biochem. Biophys. Res. Commun. 420(1), 130-

     135.

6.  Lim, D.H., Han, J.Y., Kim, J.R., Lee, Y.S., and Kim, H.Y. (2012). Methionine sulfoxide reductase B in the endoplasmic

     reticulum is critical for stress resistance and aging in Drosophila. Biochem. Biophys. Res. Commun. 419(1), 20-26.

5.  Lim, D.H.*, Oh, C.T.*, Lee, L., Hong, J.S., Noh, S.H., Hwang, S., Kim, S., Han, S.J., and Lee, Y.S. (2011). The

     endogenous siRNA pathway in Drosophila impacts stress resistance and lifespan by regulating metabolic homeostasis.

     FEBS Lett. 585(19), 3079-3085. (*co-first authors)

4.  Cho, I.S., Kim, J., Seo, H.Y., Lim, D.H., Hong, J.S., Park, Y.H., Park, D.C., Hong, K.C., Whang, K.Y., and Lee, Y.S.

     (2010). Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue. Mol. Biol. Rep.

     37(7), 3567-3574.

3.  Lee, Y.S., Pressman, S., Andress, A.P., Kim, K., White, J.L., Cassidy, J.J., Li, X., Lubell, K., Lim, D.H., Cho, I.S.,   

     Nakahara, K., Preall, J.B., Bellare, P., Sontheimer, E.J., and Carthew, R.W. (2009). Silencing by small RNAs is linked to 

     endosomal trafficking. Nature Cell Biology 11(9), 1150-1156.

2.  Cho, I.S., Kim, J., Lim, D.H., Ahn, H.C., Kim, H., Lee, K.B., and Lee, Y.S. (2008). Improved serum stability and           

     biophysical properties of siRNAs following chemical modifications. Biotechnol. Lett. 30(11), 1901-1908.

1.  Lim, D.H.*, Kim, J.*, Kim, S.U., Carthew, R.W., and Lee, Y.S. (2008).  Functional analysis of dicer-2 missense mutations       in the siRNA pathway of Drosophila. Biochem. Biophys. Res. Commun. 371(3), 525-530. (*co-first authors)